Index

A

add_filter() (gseapy.biomart.Biomart method)

B

barplot() (in module gseapy.plot)

Biomart (class in gseapy.biomart)

C

calc_pvalues() (in module gseapy.stats) calculate_metric() (gseapy.gsea.GSEA method)

check_genes() (gseapy.enrichr.Enrichr method) corplot() (gseapy.gsea.SingleSampleGSEA method)

D

dotplot() (in module gseapy.plot)

download_library() (in module gseapy.parser)

E

enrich() (gseapy.enrichr.Enrichr method) (in module gseapy) enrichment_map() (in module gseapy.plot)

enrichment_score() (gseapy.base.GSEAbase method) Enrichr (class in gseapy.enrichr) enrichr() (in module gseapy)

F

fdrcorrection() (in module gseapy.stats)

filter_gmt() (gseapy.enrichr.Enrichr method)

G

get_attributes() (gseapy.biomart.Biomart method) get_background() (gseapy.enrichr.Enrichr method) get_datasets() (gseapy.biomart.Biomart method) get_filters() (gseapy.biomart.Biomart method) get_libraries() (gseapy.base.GSEAbase method) (gseapy.enrichr.Enrichr method) get_library() (in module gseapy.parser) get_library_name() (in module gseapy.parser) get_marts() (gseapy.biomart.Biomart method) get_results() (gseapy.enrichr.Enrichr method) GSEA (class in gseapy.gsea) gsea() (in module gseapy) gsea_cls_parser() (in module gseapy.parser)

gsea_edb_parser() (gseapy.gsea.Replot method) (in module gseapy.parser) GSEAbase (class in gseapy.base) gseaplot() (in module gseapy.plot) gseaplot2() (in module gseapy.plot) gseapy (module) gseapy.base (module) gseapy.biomart (module) gseapy.enrichr (module) gseapy.gsea (module) gseapy.parser (module) gseapy.plot (module) gseapy.scipalette (module) gseapy.stats (module)

H

heatmap() (in module gseapy.plot)

L

load_classes() (gseapy.gsea.GSEA method) load_data() (gseapy.gsea.GSEA method)

load_gmt() (gseapy.base.GSEAbase method) load_gmt_only() (gseapy.base.GSEAbase method)

M

MidpointNormalize (class in gseapy.plot)

multiple_testing_correction() (in module gseapy.stats)

N

norm_correl() (gseapy.gsea.SingleSampleGSEA method)

norm_samples() (gseapy.gsea.SingleSampleGSEA method)

P

parse_background() (gseapy.enrichr.Enrichr method) parse_genelists() (gseapy.enrichr.Enrichr method) parse_genesets() (gseapy.enrichr.Enrichr method) parse_gmt() (gseapy.base.GSEAbase method)

plot() (gseapy.base.GSEAbase method) prepare_outdir() (gseapy.base.GSEAbase method) (gseapy.enrichr.Enrichr method) Prerank (class in gseapy.gsea) prerank() (in module gseapy)

Q

query() (gseapy.biomart.Biomart method)

query_simple() (gseapy.biomart.Biomart method)

R

read_gmt() (in module gseapy.parser) Replot (class in gseapy.gsea) replot() (in module gseapy) results (gseapy.base.GSEAbase attribute) ringplot() (in module gseapy.plot)

run() (gseapy.enrichr.Enrichr method) (gseapy.gsea.GSEA method) (gseapy.gsea.Prerank method) (gseapy.gsea.Replot method) (gseapy.gsea.SingleSampleGSEA method) runSamplesPermu() (gseapy.gsea.SingleSampleGSEA method)

S

send_genes() (gseapy.enrichr.Enrichr method) set_organism() (gseapy.enrichr.Enrichr method)

setplot() (gseapy.gsea.SingleSampleGSEA method) SingleSampleGSEA (class in gseapy.gsea) ssgsea() (in module gseapy)

T

to_df() (gseapy.base.GSEAbase method)

Z

zscore() (in module gseapy.plot)