.. _run:

Developmental Guide
=====================================

.. module:: gseapy


Module APIs
---------------------

.. autofunction:: gsea()

.. autofunction:: prerank()

.. autofunction:: ssgsea()

.. autofunction:: enrichr()

.. autofunction:: enrich()

.. autofunction:: replot()


GSEA Statistics
-------------------------
.. automodule:: gseapy.gsea
   :members:

.. automodule:: gseapy.base
   :members:


Over-representation Statistics
-------------------------------------------------------

.. automodule:: gseapy.stats
   :members:


Enrichr API
--------------------------

.. automodule:: gseapy.enrichr
   :members:



BioMart API
--------------------------

.. automodule:: gseapy.biomart
   :members:


Parser
--------------------------

.. automodule:: gseapy.parser
   :members:


Visualization
--------------------------

.. automodule:: gseapy.plot
   :members:


Scientific Journal and Sci- themed Color Palettes
-------------------------------------------------------

.. automodule:: gseapy.scipalette
   :members:


Utils
-------------------------------------------------------